| displaySaveWarnings(Entry) |  | 0% |  | 0% | 10 | 10 | 47 | 47 | 1 | 1 |
| EntryEdit(EntryGroup) |   | 82% |   | 41% | 17 | 18 | 33 | 180 | 0 | 1 |
| isUniqueID(EntryGroup, ChadoTransactionManager, Selection, GotoEventSource, BasePlotGroup) |  | 0% |  | 0% | 7 | 7 | 32 | 32 | 1 | 1 |
| commitToDatabase(EntryGroup, ChadoTransactionManager, JFrame, Selection, GotoEventSource, BasePlotGroup, boolean) |  | 0% |  | 0% | 9 | 9 | 25 | 25 | 1 | 1 |
| loadBamAndVcf(List, List) |   | 50% |   | 30% | 5 | 6 | 17 | 35 | 0 | 1 |
| setNGDivider() |   | 52% |   | 50% | 6 | 9 | 14 | 30 | 0 | 1 |
| entryEditFinished() |  | 0% |  | 0% | 3 | 3 | 17 | 17 | 1 | 1 |
| canCommitChecks(EntryGroup, ChadoTransactionManager, JFrame, Selection, GotoEventSource, BasePlotGroup) |  | 0% |  | 0% | 7 | 7 | 15 | 15 | 1 | 1 |
| saveEntry(Entry, boolean, boolean, boolean, int, boolean) |  | 0% |  | 0% | 7 | 7 | 15 | 15 | 1 | 1 |
| readAnEntry(EntrySource) |  | 0% |  | 0% | 2 | 2 | 11 | 11 | 1 | 1 |
| makeFileMenu() |   | 92% |   | 58% | 13 | 18 | 7 | 131 | 0 | 1 |
| makeMenus(JSplitPane, JScrollPane, LookSeqPanel) |   | 92% |   | 37% | 4 | 5 | 4 | 70 | 0 | 1 |
| getDatabaseDocumentEntry() |  | 0% |  | 0% | 3 | 3 | 4 | 4 | 1 | 1 |
| resetScrolls() |  | 0% | | n/a | 1 | 1 | 7 | 7 | 1 | 1 |
| closeEntryEdit() |  | 0% |  | 0% | 4 | 4 | 7 | 7 | 1 | 1 |
| saveDefaultEntry() |  | 0% |  | 0% | 2 | 2 | 4 | 4 | 1 | 1 |
| saveEntry(Entry, boolean, boolean, boolean, int) |  | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 |
| commitToDatabase(EntryGroup, ChadoTransactionManager, JFrame, Selection, GotoEventSource, BasePlotGroup) |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| saveAllEntries() |  | 0% | | n/a | 1 | 1 | 3 | 3 | 1 | 1 |
| entryChanged(EntryChangeEvent) |  | 0% |  | 0% | 2 | 2 | 3 | 3 | 1 | 1 |
| entryGroupChanged(EntryGroupChangeEvent) | | 0% |  | 0% | 2 | 2 | 3 | 3 | 1 | 1 |
| getFeatureList() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getBaseDisplay() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getOneLinePerEntryDisplay() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getBasePlotGroup() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getBamPanel() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getVcfPanel() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getVcfView() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getEntryGroupDisplay() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getSelectionInfoDisplay() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getFeatureDisplay() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| printMenu() |  | 100% | | n/a | 0 | 1 | 0 | 10 | 0 | 1 |
| setExpanderButton(JButton) |  | 100% | | n/a | 0 | 1 | 0 | 9 | 0 | 1 |
| static {...} |  | 100% | | n/a | 0 | 1 | 0 | 5 | 0 | 1 |
| getJamView() | | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getGotoEventSource() | | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getEntryGroup() | | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getSelection() | | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
| getDefaultFont() | | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |