| Program name | Description |
| ovrnaalifold |
Calculate secondary structures for a set of aligned RNAs
|
| ovrnaalifoldpf |
Calculate secondary structures for a set of aligned RNAs (partition)
|
| ovrnacofold |
Calculate secondary structures of RNA dimers
|
| ovrnacofoldconc |
Calculate secondary structures of RNA dimers (concentrations)
|
| ovrnacofoldpf |
Calculate secondary structures of RNA dimers (partitioning)
|
| ovrnadistance |
Calculate distances between RNA secondary structures
|
| ovrnaduplex |
Predict RNA duplex (hybridization) sites and structure
|
| ovrnaeval |
Calculate energy of RNA sequences with a given secondary structure
|
| ovrnaevalpair |
Calculate energy of RNA sequences on given secondary structure
|
| ovrnafold |
Calculate min. energy RNA structure / pair probabilities (partition)
|
| ovrnafoldpf |
Calculate min. energy RNA structure / pair probabilities
|
| ovrnaheat |
Calculate specific heat of RNA melting
|
| ovrnainverse |
Find RNA sequences with a given secondary structure
|
| ovrnalfold |
Calculate locally stable secondary structures of RNAs
|
| ovrnaplot |
Draw RNA secondary structures
|
| ovrnasubopt |
Calculate suboptimal secondary structure of RNA
|
| vrna2dfold |
Calculate RNA structures and samples of k,l neighbourhoods
|
| vrnaaliduplex |
RNA duplex calculation for two sequence alignments
|
| vrnaalifold |
Calculate secondary structures for a set of aligned RNAs
|
| vrnaalifoldpf |
Calculate secondary structures for a set of aligned RNAs (partition)
|
| vrnacofold |
Calculate secondary structures of RNA dimers
|
| vrnacofoldconc |
Calculate secondary structures of RNA dimers (concentrations)
|
| vrnacofoldpf |
Calculate secondary structures of RNA dimers (partitioning)
|
| vrnadistance |
Calculate distances between RNA secondary structures
|
| vrnaduplex |
Predict RNA duplex (hybridization) sites and structure
|
| vrnaeval |
Calculate energy of RNA sequences with a given secondary structure
|
| vrnaevalpair |
Calculate energy of RNA sequences on given secondary structure
|
| vrnafold |
Calculate min. energy RNA secondary structures and pair probabilities
|
| vrnafoldpf |
Calculate min. energy RNA structures / pair probabilities (partition)
|
| vrnaheat |
Calculate specific heat of RNA melting
|
| vrnainverse |
Find RNA sequences with a given secondary structure
|
| vrnalalifoldpf |
Calculate secondary structures for a set of aligned RNAs (partition)
|
| vrnalfold |
Calculate locally stable secondary structures of RNAs
|
| vrnalfoldz |
Calculate locally stable secondary structures of RNAs plus zscore
|
| vrnapkplex |
Calculate RNA structures plus pseudoknots
|
| vrnaplfold |
Compute avg. pair probabilities for local base pairs in RNA sequences
|
| vrnaplot |
Draw RNA secondary structures
|
| vrnasubopt |
Calculate suboptimal secondary structures of RNAs
|