Search parameters of the DB search. More...
#include <OpenMS/METADATA/ProteinIdentification.h>
Public Member Functions | |
| SearchParameters () | |
| bool | operator== (const SearchParameters &rhs) const |
| bool | operator!= (const SearchParameters &rhs) const |
Public Member Functions inherited from MetaInfoInterface | |
| MetaInfoInterface () | |
| constructor More... | |
| MetaInfoInterface (const MetaInfoInterface &rhs) | |
| copy constructor More... | |
| ~MetaInfoInterface () | |
| destructor More... | |
| MetaInfoInterface & | operator= (const MetaInfoInterface &rhs) |
| assignment operator More... | |
| bool | operator== (const MetaInfoInterface &rhs) const |
| Equality operator. More... | |
| bool | operator!= (const MetaInfoInterface &rhs) const |
| Equality operator. More... | |
| const DataValue & | getMetaValue (const String &name) const |
| returns the value corresponding to a string More... | |
| const DataValue & | getMetaValue (UInt index) const |
| returns the value corresponding to an index More... | |
| bool | metaValueExists (const String &name) const |
| returns if this MetaInfo is set More... | |
| bool | metaValueExists (UInt index) const |
| returns if this MetaInfo is set More... | |
| void | setMetaValue (const String &name, const DataValue &value) |
| sets the DataValue corresponding to a name More... | |
| void | setMetaValue (UInt index, const DataValue &value) |
| sets the DataValue corresponding to an index More... | |
| void | removeMetaValue (const String &name) |
Removes the DataValue corresponding to name if it exists. More... | |
| void | removeMetaValue (UInt index) |
Removes the DataValue corresponding to index if it exists. More... | |
| void | getKeys (std::vector< String > &keys) const |
| fills the given vector with a list of all keys for which a value is set More... | |
| void | getKeys (std::vector< UInt > &keys) const |
| fills the given vector with a list of all keys for which a value is set More... | |
| bool | isMetaEmpty () const |
| returns if the MetaInfo is empty More... | |
| void | clearMetaInfo () |
| removes all meta values More... | |
Public Attributes | |
| String | db |
| The used database. More... | |
| String | db_version |
| The database version. More... | |
| String | taxonomy |
| The taxonomy restriction. More... | |
| String | charges |
| The allowed charges for the search. More... | |
| PeakMassType | mass_type |
| Mass type of the peaks. More... | |
| std::vector< String > | fixed_modifications |
| Used fixed modifications. More... | |
| std::vector< String > | variable_modifications |
| Allowed variable modifications. More... | |
| DigestionEnzyme | enzyme |
| The enzyme used for cleavage. More... | |
| UInt | missed_cleavages |
| The number of allowed missed cleavages. More... | |
| DoubleReal | peak_mass_tolerance |
| Mass tolerance of fragment ions (Dalton) More... | |
| DoubleReal | precursor_tolerance |
| Mass tolerance of precursor ions (Dalton) More... | |
Additional Inherited Members | |
Static Public Member Functions inherited from MetaInfoInterface | |
| static MetaInfoRegistry & | metaRegistry () |
| retuns a reference to the MetaInfoRegistry More... | |
Protected Member Functions inherited from MetaInfoInterface | |
| void | createIfNotExists_ () |
| creates the MetaInfo object if it does not exist More... | |
Protected Attributes inherited from MetaInfoInterface | |
| MetaInfo * | meta_ |
| pointer to the MetaInfo object. 0 by default More... | |
Search parameters of the DB search.
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References ProteinIdentification::SearchParameters::charges, ProteinIdentification::SearchParameters::db, ProteinIdentification::SearchParameters::db_version, ProteinIdentification::SearchParameters::enzyme, ProteinIdentification::SearchParameters::fixed_modifications, ProteinIdentification::SearchParameters::mass_type, ProteinIdentification::SearchParameters::missed_cleavages, ProteinIdentification::SearchParameters::peak_mass_tolerance, ProteinIdentification::SearchParameters::precursor_tolerance, ProteinIdentification::SearchParameters::taxonomy, and ProteinIdentification::SearchParameters::variable_modifications.
| String charges |
The allowed charges for the search.
Referenced by ProteinIdentification::SearchParameters::operator==().
| String db |
The used database.
Referenced by DBAdapter::loadExperiment(), and ProteinIdentification::SearchParameters::operator==().
| String db_version |
The database version.
Referenced by ProteinIdentification::SearchParameters::operator==().
| DigestionEnzyme enzyme |
The enzyme used for cleavage.
Referenced by ProteinIdentification::SearchParameters::operator==().
| std::vector<String> fixed_modifications |
Used fixed modifications.
Referenced by ProteinIdentification::SearchParameters::operator==().
| PeakMassType mass_type |
Mass type of the peaks.
Referenced by ProteinIdentification::SearchParameters::operator==().
| UInt missed_cleavages |
The number of allowed missed cleavages.
Referenced by ProteinIdentification::SearchParameters::operator==().
| DoubleReal peak_mass_tolerance |
Mass tolerance of fragment ions (Dalton)
Referenced by ProteinIdentification::SearchParameters::operator==().
| DoubleReal precursor_tolerance |
Mass tolerance of precursor ions (Dalton)
Referenced by ProteinIdentification::SearchParameters::operator==().
| String taxonomy |
The taxonomy restriction.
Referenced by ProteinIdentification::SearchParameters::operator==().
| std::vector<String> variable_modifications |
Allowed variable modifications.
Referenced by ProteinIdentification::SearchParameters::operator==().
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:33 using doxygen 1.8.5 |