| action_mode_ | SpectrumCanvas | protected |
| actionModeChange() | SpectrumCanvas | signal |
| ActionModes enum name | SpectrumCanvas | |
| activateLayer(Size layer_index) | Spectrum1DCanvas | slot |
| activateSpectrum(Size index, bool repaint=true) | Spectrum1DCanvas | |
| activeLayerIndex() const | SpectrumCanvas | |
| addDataProcessing_(MSExperiment< PeakType > &map, DataProcessing::ProcessingAction action) const | SpectrumCanvas | inlineprotected |
| addLabelAnnotation_(const QPoint &screen_position, QString label_text) | Spectrum1DCanvas | protected |
| addLayer(ExperimentSharedPtrType map, const String &filename="") | SpectrumCanvas | |
| addLayer(FeatureMapSharedPtrType map, const String &filename="") | SpectrumCanvas | |
| addLayer(ConsensusMapSharedPtrType map, const String &filename="") | SpectrumCanvas | |
| addLayer(std::vector< PeptideIdentification > &peptides, const String &filename="") | SpectrumCanvas | |
| addPeakAnnotation(PeakIndex peak_index, QString text, QColor color) | Spectrum1DCanvas | |
| addUserLabelAnnotation_(const QPoint &screen_position) | Spectrum1DCanvas | protected |
| addUserPeakAnnotation_(PeakIndex near_peak) | Spectrum1DCanvas | protected |
| adjustBuffer_() | SpectrumCanvas | protected |
| aligned_peaks_indices_ | Spectrum1DCanvas | protected |
| aligned_peaks_mz_delta_ | Spectrum1DCanvas | protected |
| alignment_layer_1_ | Spectrum1DCanvas | protected |
| alignment_layer_2_ | Spectrum1DCanvas | protected |
| alignment_score_ | Spectrum1DCanvas | protected |
| AM_MEASURE enum value | SpectrumCanvas | |
| AM_TRANSLATE enum value | SpectrumCanvas | |
| AM_ZOOM enum value | SpectrumCanvas | |
| AreaType typedef | SpectrumCanvas | |
| buffer_ | SpectrumCanvas | protected |
| changeLayerFilterState(Size i, bool b) | SpectrumCanvas | slot |
| changeLegendVisibility() | SpectrumCanvas | signal |
| changeVisibility(Size i, bool b) | SpectrumCanvas | slot |
| changeVisibleArea_(double lo, double hi, bool repaint=true, bool add_to_stack=false) | Spectrum1DCanvas | protected |
| changeVisibleArea_(const AreaType &new_area, bool repaint=true, bool add_to_stack=false) | Spectrum1DCanvas | protectedvirtual |
| check_defaults_ | DefaultParamHandler | protected |
| ConsensusMapSharedPtrType typedef | SpectrumCanvas | |
| ConsensusMapType typedef | SpectrumCanvas | |
| context_add_ | SpectrumCanvas | protected |
| contextMenuEvent(QContextMenuEvent *e) | Spectrum1DCanvas | protected |
| current_layer_ | SpectrumCanvas | protected |
| currentLayerParamtersChanged_() | Spectrum1DCanvas | protectedslot |
| currentPeakData_() | SpectrumCanvas | inlineprotected |
| dataToWidget(const PeakType &peak, QPoint &point, bool flipped=false, bool percentage=true) | Spectrum1DCanvas | |
| dataToWidget(DoubleReal x, DoubleReal y, QPoint &point, bool flipped=false, bool percentage=false) | Spectrum1DCanvas | |
| dataToWidget_(DoubleReal x, DoubleReal y, QPoint &point) | SpectrumCanvas | inlineprotected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| DM_CONNECTEDLINES enum value | Spectrum1DCanvas | |
| DM_PEAKS enum value | Spectrum1DCanvas | |
| draw_modes_ | Spectrum1DCanvas | protected |
| drawAlignment(QPainter &painter) | Spectrum1DCanvas | |
| drawAnnotations(Size layer_index, QPainter &painter) | Spectrum1DCanvas | |
| drawCoordinates_(QPainter &painter, const PeakIndex &peak) | Spectrum1DCanvas | protected |
| drawDashedLine_(const QPoint &from, const QPoint &to, QPainter &painter) | Spectrum1DCanvas | protected |
| drawDeltas_(QPainter &painter, const PeakIndex &start, const PeakIndex &end) | Spectrum1DCanvas | protected |
| drawHighlightedPeak_(Size layer_index, const PeakIndex &peak, QPainter &painter, bool draw_elongation=false) | Spectrum1DCanvas | protected |
| DrawModes enum name | Spectrum1DCanvas | |
| drawText_(QPainter &painter, QStringList text) | SpectrumCanvas | protected |
| ensureAnnotationsWithinDataRange_() | Spectrum1DCanvas | protected |
| enterEvent(QEvent *e) | SpectrumCanvas | protected |
| error_name_ | DefaultParamHandler | protected |
| ExperimentSharedPtrType typedef | SpectrumCanvas | |
| ExperimentType typedef | SpectrumCanvas | |
| FeatureMapSharedPtrType typedef | SpectrumCanvas | |
| FeatureMapType typedef | SpectrumCanvas | |
| FeatureType typedef | SpectrumCanvas | |
| findPeakAtPosition_(QPoint) | Spectrum1DCanvas | protected |
| finishAdding_() | Spectrum1DCanvas | protectedvirtual |
| flipLayer(Size index) | Spectrum1DCanvas | |
| flippedLayersExist() | Spectrum1DCanvas | |
| focusOutEvent(QFocusEvent *e) | SpectrumCanvas | protected |
| getActionMode() const | SpectrumCanvas | inline |
| getAlignedPeaksIndices() | Spectrum1DCanvas | |
| getAlignmentScore() | Spectrum1DCanvas | |
| getAlignmentSize() | Spectrum1DCanvas | |
| getCurrentLayer() const | SpectrumCanvas | inline |
| getCurrentLayer() | SpectrumCanvas | inline |
| getCurrentLayer_() | SpectrumCanvas | inlineprotected |
| getCurrentLayerIndex() const | SpectrumCanvas | inline |
| getCurrentMaxIntensity() const | SpectrumCanvas | inline |
| getCurrentMinIntensity() const | SpectrumCanvas | inline |
| getDataRange() | SpectrumCanvas | |
| getDefaults() const | DefaultParamHandler | |
| getDrawMode() const | Spectrum1DCanvas | |
| getIdentificationMZ_(const Size layer_index, const PeptideIdentification &peptide) const | SpectrumCanvas | protected |
| getIntensityMode() const | SpectrumCanvas | inline |
| getLayer(Size index) const | SpectrumCanvas | inline |
| getLayer_(Size index) | SpectrumCanvas | inlineprotected |
| getLayerCount() const | SpectrumCanvas | inline |
| getLayerFlag(LayerData::Flags f) const | SpectrumCanvas | inline |
| getLayerFlag(Size layer, LayerData::Flags f) const | SpectrumCanvas | inline |
| getLayerName(Size i) | SpectrumCanvas | |
| getMaxIntensity(Size index) const | SpectrumCanvas | inline |
| getMinIntensity(Size index) const | SpectrumCanvas | inline |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getPercentageFactor() | SpectrumCanvas | |
| getSnapFactor() | SpectrumCanvas | |
| getSpectrumWidget() const | SpectrumCanvas | inline |
| getSubsections() const | DefaultParamHandler | |
| getVisibleArea() const | SpectrumCanvas | inline |
| getVisibleConsensusData(ConsensusMapType &map) const | SpectrumCanvas | slot |
| getVisibleFeatureData(FeatureMapType &map) const | SpectrumCanvas | slot |
| getVisibleIdentifications(std::vector< PeptideIdentification > &peptides) const | SpectrumCanvas | slot |
| getVisiblePeakData(ExperimentType &map) const | SpectrumCanvas | slot |
| gridLinesShown() const | SpectrumCanvas | inline |
| horizontalScrollBarChange(int value) | Spectrum1DCanvas | virtualslot |
| IM_LOG enum value | SpectrumCanvas | |
| IM_NONE enum value | SpectrumCanvas | |
| IM_PERCENTAGE enum value | SpectrumCanvas | |
| IM_SNAP enum value | SpectrumCanvas | |
| intensity_mode_ | SpectrumCanvas | protected |
| intensityModeChange_() | Spectrum1DCanvas | protectedvirtual |
| IntensityModes enum name | SpectrumCanvas | |
| is_swapped_ | Spectrum1DCanvas | protected |
| isMzToXAxis() | SpectrumCanvas | inline |
| keyPressEvent(QKeyEvent *e) | Spectrum1DCanvas | protected |
| keyReleaseEvent(QKeyEvent *e) | SpectrumCanvas | protected |
| LabelMode enum name | Spectrum1DCanvas | |
| last_mouse_pos_ | SpectrumCanvas | protected |
| layerActivated(QWidget *w) | SpectrumCanvas | signal |
| layerModficationChange(Size layer, bool modified) | SpectrumCanvas | signal |
| layers_ | SpectrumCanvas | protected |
| layerZoomChanged(QWidget *w) | SpectrumCanvas | signal |
| leaveEvent(QEvent *e) | SpectrumCanvas | protected |
| LM_XABSOLUTE_YABSOLUTE enum value | Spectrum1DCanvas | |
| LM_XABSOLUTE_YPERCENT enum value | Spectrum1DCanvas | |
| LM_XPERCENT_YABSOLUTE enum value | Spectrum1DCanvas | |
| LM_XPERCENT_YPERCENT enum value | Spectrum1DCanvas | |
| measurement_start_ | SpectrumCanvas | protected |
| measurement_start_point_ | Spectrum1DCanvas | protected |
| mirror_mode_ | Spectrum1DCanvas | protected |
| mirrorModeActive() | Spectrum1DCanvas | |
| modificationStatus_(Size layer_index, bool modified) | SpectrumCanvas | protected |
| mouseMoveEvent(QMouseEvent *e) | Spectrum1DCanvas | protected |
| mousePressEvent(QMouseEvent *e) | Spectrum1DCanvas | protected |
| mouseReleaseEvent(QMouseEvent *e) | Spectrum1DCanvas | protected |
| moving_annotations_ | Spectrum1DCanvas | protected |
| mz_to_x_axis_ | SpectrumCanvas | protected |
| mzToXAxis(bool mz_to_x_axis) | SpectrumCanvas | |
| operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| overall_data_range_ | SpectrumCanvas | protected |
| paint(QPainter *paint_device, QPaintEvent *e) | Spectrum1DCanvas | |
| paintEvent(QPaintEvent *e) | Spectrum1DCanvas | protected |
| paintGridLines_(QPainter &painter) | Spectrum1DCanvas | protectedvirtual |
| param_ | DefaultParamHandler | protected |
| peak_penstyle_ | Spectrum1DCanvas | protected |
| PeakType typedef | SpectrumCanvas | |
| percentage_factor_ | SpectrumCanvas | protected |
| performAlignment(Size layer_index_1, Size layer_index_2, const Param ¶m) | Spectrum1DCanvas | |
| PointType typedef | SpectrumCanvas | |
| preferencesChange() | SpectrumCanvas | signal |
| recalculateAxes() | SpectrumCanvas | signal |
| recalculateRanges_(UInt mz_dim, UInt rt_dim, UInt it_dim) | SpectrumCanvas | protected |
| recalculateSnapFactor_() | Spectrum1DCanvas | protectedvirtual |
| removeLayer(Size layer_index) | Spectrum1DCanvas | slot |
| resetAlignment() | Spectrum1DCanvas | |
| resetZoom(bool repaint=true) | SpectrumCanvas | slot |
| resizeEvent(QResizeEvent *e) | SpectrumCanvas | protected |
| rubber_band_ | SpectrumCanvas | protected |
| saveCurrentLayer(bool visible) | Spectrum1DCanvas | virtual |
| selected_peak_ | SpectrumCanvas | protected |
| sendCursorStatus(double mz=-1.0, double rt=-1.0) | SpectrumCanvas | signal |
| sendStatusMessage(std::string message, OpenMS::UInt time) | SpectrumCanvas | signal |
| setAdditionalContextMenu(QMenu *menu) | SpectrumCanvas | slot |
| setCurrentLayerParameters(const Param ¶m) | SpectrumCanvas | inline |
| setCurrentLayerPeakPenStyle(Qt::PenStyle ps) | Spectrum1DCanvas | |
| setDrawMode(DrawModes mode) | Spectrum1DCanvas | |
| setFilters(const DataFilters &filters) | SpectrumCanvas | virtual |
| setIntensityMode(IntensityModes mod) | SpectrumCanvas | inline |
| setLabel(LayerData::LabelType label) | SpectrumCanvas | inline |
| setLayerFlag(LayerData::Flags f, bool value) | SpectrumCanvas | inline |
| setLayerFlag(Size layer, LayerData::Flags f, bool value) | SpectrumCanvas | inline |
| setLayerName(Size i, const String &name) | SpectrumCanvas | |
| setMirrorModeActive(bool b) | Spectrum1DCanvas | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setSpectrumWidget(SpectrumWidget *widget) | SpectrumCanvas | inline |
| setSwappedAxis(bool swapped) | Spectrum1DCanvas | |
| setVisibleArea(DRange< 2 > range) | Spectrum1DCanvas | slot |
| show_alignment_ | Spectrum1DCanvas | protected |
| show_grid_ | SpectrumCanvas | protected |
| show_timing_ | SpectrumCanvas | protected |
| showCurrentLayerPreferences() | Spectrum1DCanvas | virtual |
| showCurrentPeaksAs2D() | Spectrum1DCanvas | signal |
| showCurrentPeaksAs3D() | Spectrum1DCanvas | signal |
| showGridLines(bool show) | SpectrumCanvas | slot |
| showMetaData(bool modifiable=false, Int index=-1) | SpectrumCanvas | virtual |
| snap_factors_ | SpectrumCanvas | protected |
| Spectrum1DCanvas(const Param &preferences, QWidget *parent=0) | Spectrum1DCanvas | |
| spectrum_widget_ | SpectrumCanvas | protected |
| SpectrumCanvas(const Param &preferences, QWidget *parent=0) | SpectrumCanvas | |
| SpectrumConstIteratorType typedef | SpectrumCanvas | |
| SpectrumType typedef | SpectrumCanvas | |
| subsections_ | DefaultParamHandler | protected |
| translateBackward_() | SpectrumCanvas | protectedvirtual |
| translateForward_() | SpectrumCanvas | protectedvirtual |
| translateLeft_() | Spectrum1DCanvas | protectedvirtual |
| translateRight_() | Spectrum1DCanvas | protectedvirtual |
| update_(const char *caller_name) | SpectrumCanvas | protectedvirtual |
| update_buffer_ | SpectrumCanvas | protected |
| updateCursor_() | SpectrumCanvas | protectedslot |
| updateHScrollbar(float, float, float, float) | SpectrumCanvas | signal |
| updateLayer(Size i) | Spectrum1DCanvas | virtualslot |
| updateMembers_() | DefaultParamHandler | protectedvirtual |
| updatePercentageFactor_(Size layer_index) | Spectrum1DCanvas | protected |
| updateScrollbars_() | Spectrum1DCanvas | protectedvirtual |
| updateVScrollbar(float, float, float, float) | SpectrumCanvas | signal |
| verticalScrollBarChange(int value) | SpectrumCanvas | virtualslot |
| visible_area_ | SpectrumCanvas | protected |
| visibleAreaChanged(DRange< 2 > area) | SpectrumCanvas | signal |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| wheelEvent(QWheelEvent *e) | SpectrumCanvas | protected |
| widgetToData(const QPoint &pos, bool percentage=false) | Spectrum1DCanvas | |
| widgetToData(DoubleReal x, DoubleReal y, bool percentage=false) | Spectrum1DCanvas | |
| widgetToData_(DoubleReal x, DoubleReal y) | SpectrumCanvas | inlineprotected |
| widgetToData_(const QPoint &pos) | SpectrumCanvas | inlineprotected |
| zoom_(int x, int y, bool zoom_in) | Spectrum1DCanvas | protectedvirtual |
| zoom_pos_ | SpectrumCanvas | protected |
| zoom_stack_ | SpectrumCanvas | protected |
| zoomAdd_(const AreaType &area) | SpectrumCanvas | protected |
| zoomBack_() | SpectrumCanvas | protected |
| zoomClear_() | SpectrumCanvas | protected |
| zoomForward_() | Spectrum1DCanvas | protectedvirtual |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~Spectrum1DCanvas() | Spectrum1DCanvas | virtual |
| ~SpectrumCanvas() | SpectrumCanvas | virtual |