Base class for all Caap evaluation algorithms. More...
#include <OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.h>
Public Member Functions | |
| MapAlignmentEvaluationAlgorithm () | |
| Default constructor. More... | |
| virtual | ~MapAlignmentEvaluationAlgorithm () |
| Destructor. More... | |
| virtual void | evaluate (const ConsensusMap &conensus_map_in, const ConsensusMap &consensus_map_gt, const DoubleReal &rt_dev, const DoubleReal &mz_dev, const Peak2D::IntensityType &int_dev, const bool use_charge, DoubleReal &out)=0 |
| Applies the algorithm. The input consensus map is compared to the ground truth. More... | |
| bool | isSameHandle (const FeatureHandle &lhs, const FeatureHandle &rhs, const DoubleReal &rt_dev, const DoubleReal &mz_dev, const Peak2D::IntensityType &int_dev, const bool use_charge) |
| Decides if two features are the same, based on maximum allowed deviations for retention time, m/z and intensity. More... | |
Static Public Member Functions | |
| static void | registerChildren () |
| Register all derived classes in this method. More... | |
Protected Types | |
| typedef ConsensusFeature::HandleSetType::const_iterator | HandleIterator |
Private Member Functions | |
| MapAlignmentEvaluationAlgorithm (const MapAlignmentEvaluationAlgorithm &) | |
| Copy constructor is not implemented -> private. More... | |
| MapAlignmentEvaluationAlgorithm & | operator= (const MapAlignmentEvaluationAlgorithm &) |
| Assignment operator is not implemented -> private. More... | |
Base class for all Caap evaluation algorithms.
These algorithms evaluates alignment results against a ground truth.
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protected |
Default constructor.
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virtual |
Destructor.
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private |
Copy constructor is not implemented -> private.
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pure virtual |
Applies the algorithm. The input consensus map is compared to the ground truth.
Implemented in MapAlignmentEvaluationAlgorithmPrecision, and MapAlignmentEvaluationAlgorithmRecall.
| bool isSameHandle | ( | const FeatureHandle & | lhs, |
| const FeatureHandle & | rhs, | ||
| const DoubleReal & | rt_dev, | ||
| const DoubleReal & | mz_dev, | ||
| const Peak2D::IntensityType & | int_dev, | ||
| const bool | use_charge | ||
| ) |
Decides if two features are the same, based on maximum allowed deviations for retention time, m/z and intensity.
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private |
Assignment operator is not implemented -> private.
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static |
Register all derived classes in this method.
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5 |