Imports an mzML file to an OpenMS database.
[Tool is no longer supported and will be removed in OpenMS 2.0]
Besides the file to import, only the connection data has to be given. The data can then be retrieved by the DBExporter.
The init flag can be used to create a new OpenMS database.
The command line parameters of this tool are:
DBImporter -- Imports data to an OpenMS database.
Version: 1.11.1 Nov 14 2013, 11:18:15, Revision: 11976
Usage:
DBImporter <options>
Options (mandatory options marked with '*'):
-user <user>* User/login of the DB
-host <host> Host name of the DB server (default: 'localhost')
-password <password>* Password for the user
-port <port> Port the DB server is running on (default: '3306')
-db <name>* DB name
-in <file> Input file (valid formats: 'mzML')
-init Deletes all tables and sets up a new OpenMS database.
The data of 'in' is not imported!
Common TOPP options:
-ini <file> Use the given TOPP INI file
-threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1')
-write_ini <file> Writes the default configuration file
--help Shows options
--helphelp Shows all options (including advanced)
INI file documentation of this tool:
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:24 using doxygen 1.8.5 |