Namespace used to hide implementation details from users. More...
Namespaces | |
| ClassTest | |
| Namespace for class tests. | |
Classes | |
| class | DIntervalBase |
| A base class for D-dimensional interval. More... | |
| struct | FileMapping |
| Maps input/output files to filenames for the external program. More... | |
| struct | MappingParam |
| Filename mappings for all input/output files. More... | |
| struct | ToolDescriptionInternal |
| ToolDescription Class. More... | |
| struct | ToolExternalDetails |
| struct | ToolDescription |
| class | IntensityIteratorWrapper |
| An iterator wrapper to access peak intensities instead of the peak itself. More... | |
| class | AcqusHandler |
| Read-only acqus File handler for XMass Analysis. More... | |
| class | FidHandler |
| Read-only fid File handler for XMass Analysis. More... | |
| class | MascotXMLHandler |
| Handler that is used for parsing MascotXML data. More... | |
| class | MzDataHandler |
| XML handler for MzDataFile. More... | |
| class | MzIdentMLHandler |
| XML handler for MzIdentMLFile. More... | |
| class | MzMLHandler |
| XML handler for MzMLFile. More... | |
| class | MzQuantMLHandler |
| XML handler for MzQuantMLFile. More... | |
| class | MzXMLHandler |
| XML handlers for MzXMLFile. More... | |
| class | ParamXMLHandler |
| XML Handler for Param files. More... | |
| class | PTMXMLHandler |
| Handler that is used for parsing PTMXML data. More... | |
| class | ToolDescriptionHandler |
| XML handler for ToolDescriptionFile. More... | |
| class | TraMLHandler |
| XML handler for TraMLFile. More... | |
| class | UnimodXMLHandler |
| Handler that is used for parsing XTandemXML data. More... | |
| class | StringManager |
| Helper class for XML parsing that handles the memory management for conversions of Xerces strings. More... | |
| class | XMLHandler |
| Base class for XML handlers. More... | |
| struct | XTandemInfileNote |
| Note representation of bioml structure used by XTandem. More... | |
| class | XTandemInfileXMLHandler |
| Handler that is used for parsing XTandemXML data. More... | |
| class | MzDataValidator |
| Semantically validates MzXML files. More... | |
| class | MzIdentMLValidator |
| Semantically validates MzXML files. More... | |
| class | MzMLValidator |
| Semantically validates MzXML files. More... | |
| class | MzQuantMLValidator |
| Semantically validates MzQuantML files. More... | |
| class | SemanticValidator |
| Semantically validates XML files using CVMappings and a ControlledVocabulary. More... | |
| class | TraMLValidator |
| Semantically validates MzXML files. More... | |
| class | XMLFile |
| Base class for loading/storing XML files that have a handler derived from XMLHandler. More... | |
| class | OpenMSXMLFormatTarget |
| class | AreaIterator |
| Forward iterator for an area of peaks in an experiment. More... | |
| struct | IntensityLess |
| Comparator that allows to compare the indices of two peaks by their intensity. More... | |
| struct | IntensityIterator |
| Intensity iterator for a FeatureFinderDefs::IndexSet. More... | |
| struct | MzIterator |
| m/z iterator for a FeatureFinderDefs::IndexSet More... | |
| struct | RtIterator |
| Retention time iterator for a FeatureFinderDefs::IndexSet. More... | |
| class | Spectrum1DPrefDialog |
| Preferences dialog for Spectrum1DWidget. More... | |
| class | Spectrum2DPrefDialog |
| Preferences dialog for Spectrum2DWidget. More... | |
| class | Spectrum3DPrefDialog |
| Preferences dialog for Spectrum3DWidget. More... | |
| class | TOPPViewPrefDialog |
| Preferences dialog for TOPPView. More... | |
| class | ListTable |
| class | ListEditorDelegate |
| Internal delegate class. More... | |
| class | OpenMSLineEdit |
| Custom QLineEdit which emits a signal when losing focus (such that we can commit its data) More... | |
| class | ParamEditorDelegate |
| Internal delegate class for QTreeWidget. More... | |
| class | ParamTree |
| QTreeWidget that emits a signal whenever a new row is selected. More... | |
| struct | OpenMSOSInfo |
Enumerations | |
| enum | OpenMS_OS { OS_UNKNOWN, OS_MACOS, OS_WINDOWS, OS_LINUX } |
| enum | OpenMS_Architecture { ARCH_UNKOWN, ARCH_32BIT, ARCH_64BIT } |
Functions | |
| bool | PermutScoreComparator (const CompNovoIdentificationBase::Permut &p1, const CompNovoIdentificationBase::Permut &p2) |
| template<UInt D> | |
| std::ostream & | operator<< (std::ostream &os, const DIntervalBase< D > &rhs) |
| Print the contents to a stream. More... | |
| template<typename IteratorT > | |
| IntensityIteratorWrapper < IteratorT > | intensityIteratorWrapper (const IteratorT &rhs) |
| make-function so that we need no write out all those type names to get the wrapped iterator. More... | |
| void | writeXMLEscape (const String &to_escape, std::ostream &os) |
| Escapes a string to be storable into an XML File. More... | |
| String | writeXMLEscape (const String &to_escape) |
| Escapes a string and returns the escaped string. More... | |
| String | encodeTab (const String &to_encode) |
| Encodes tabs '' in the string as 	 and returns the encoded string. More... | |
| static OpenMSOSInfo | getOSInfo () |
Variables | |
| const char * | OpenMS_locale |
| std::string | OpenMS_OSNames [] = {"unkown", "MacOS", "Windows", "Linux"} |
| std::string | OpenMS_ArchNames [] = {"unkown", "32bit", "64bit"} |
Namespace used to hide implementation details from users.
| enum OpenMS_Architecture |
| enum OpenMS_OS |
| String OpenMS::Internal::encodeTab | ( | const String & | to_encode | ) |
Encodes tabs '' in the string as 	 and returns the encoded string.
| to_encode | The String to encode. |
|
static |
References OpenMSOSInfo::arch, ARCH_32BIT, ARCH_64BIT, OpenMSOSInfo::os, OS_LINUX, OS_MACOS, OpenMSOSInfo::os_version, and OS_WINDOWS.
| IntensityIteratorWrapper<IteratorT> OpenMS::Internal::intensityIteratorWrapper | ( | const IteratorT & | rhs | ) |
make-function so that we need no write out all those type names to get the wrapped iterator.
Referenced by MorphologicalFilter::filter().
| std::ostream& OpenMS::Internal::operator<< | ( | std::ostream & | os, |
| const DIntervalBase< D > & | rhs | ||
| ) |
Print the contents to a stream.
References DIntervalBase< D >::minPosition().
| bool OpenMS::Internal::PermutScoreComparator | ( | const CompNovoIdentificationBase::Permut & | p1, |
| const CompNovoIdentificationBase::Permut & | p2 | ||
| ) |
| void OpenMS::Internal::writeXMLEscape | ( | const String & | to_escape, |
| std::ostream & | os | ||
| ) |
Escapes a string to be storable into an XML File.
Some characters must be escaped which are allowed in user params. E.g. > and & are not in XML and need to be escaped. Parsing those escaped strings is automatically done by xerces
| String OpenMS::Internal::writeXMLEscape | ( | const String & | to_escape | ) |
Escapes a string and returns the escaped string.
Some characters must be escaped which are allowed in user params. E.g. > and & are not in XML and need to be escaped. Parsing those escaped strings is automatically done by xerces
| std::string OpenMS_ArchNames[] = {"unkown", "32bit", "64bit"} |
Referenced by OpenMSOSInfo::getArchAsString().
| const char* OpenMS_locale |
Used to set the locale to "C", to avoid problems on machines with incompatible locale settings (this overwrites the locale setting of the environment!)
| std::string OpenMS_OSNames[] = {"unkown", "MacOS", "Windows", "Linux"} |
Referenced by OpenMSOSInfo::getOSAsString().
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:37 using doxygen 1.8.5 |