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PROTEIN DOMAINS |
Protein domain analysis
| Program name | Description |
|---|---|
| helixturnhelix | Identify nucleic acid-binding motifs in protein sequences |
| pepcoil | Predict coiled coil regions in protein sequences |
| cathparse | Generate DCF file from raw CATH files |
| domainnr | Remove redundant domains from a DCF file |
| domainseqs | Add sequence records to a DCF file |
| domainsse | Add secondary structure records to a DCF file |
| scopparse | Generate DCF file from raw SCOP files |
| ssematch | Search a DCF file for secondary structure matches |
| domainalign | Generate alignments (DAF file) for nodes in a DCF file |
| domainrep | Reorder DCF file to identify representative structures |
| seqalign | Extend alignments (DAF file) with sequences (DHF file) |
| seqfraggle | Remove fragment sequences from DHF files |
| seqsort | Remove ambiguous classified sequences from DHF files |
| seqwords | Generate DHF files from keyword search of UniProt |
| libgen | Generate discriminating elements from alignments |
| matgen3d | Generate a 3D-1D scoring matrix from CCF files |
| rocon | Generate a hits file from comparing two DHF files |
| rocplot | Perform ROC analysis on hits files |