This is the complete list of members for ConfidenceScoring, including all inherited members.
| begin_ | ProgressLogger | mutableprotected |
| BimapType typedef | ConfidenceScoring | protected |
| chooseDecoys_() | ConfidenceScoring | protected |
| CMD enum value | ProgressLogger | |
| ConfidenceScoring(bool test_mode_=false) | ConfidenceScoring | inline |
| decoy_index_ | ConfidenceScoring | protected |
| dlg_ | ProgressLogger | mutableprotected |
| end_ | ProgressLogger | mutableprotected |
| endProgress() const | ProgressLogger | |
| extractIntensities_(BimapType &intensity_map, Size n_transitions, DoubleList &intensities) | ConfidenceScoring | protected |
| generator_ | ConfidenceScoring | protected |
| getAssayRT_(const TargetedExperiment::Peptide &assay, const String &cv_accession="MS:1000896") | ConfidenceScoring | protected |
| getLogType() const | ProgressLogger | |
| glm_ | ConfidenceScoring | protected |
| GUI enum value | ProgressLogger | |
| initialize(TargetedExperiment library, Size n_decoys, Size n_transitions, TransformationDescription rt_trafo) | ConfidenceScoring | inline |
| initializeGlm(double intercept, double rt_coef, double int_coef) | ConfidenceScoring | inline |
| int_coef | ConfidenceScoring | |
| intercept | ConfidenceScoring | |
| last_invoke_ | ProgressLogger | mutableprotected |
| library_ | ConfidenceScoring | protected |
| LogType enum name | ProgressLogger | |
| manhattanDist_(DoubleList x, DoubleList y) | ConfidenceScoring | protected |
| max_rt | ConfidenceScoring | |
| min_rt | ConfidenceScoring | |
| n_decoys_ | ConfidenceScoring | protected |
| n_transitions_ | ConfidenceScoring | protected |
| NONE enum value | ProgressLogger | |
| ProgressLogger() | ProgressLogger | |
| rand_gen_ | ConfidenceScoring | protected |
| recursion_depth_ | ProgressLogger | protectedstatic |
| rt_coef | ConfidenceScoring | |
| rt_norm_ | ConfidenceScoring | protected |
| rt_trafo_ | ConfidenceScoring | protected |
| scoreAssay_(const TargetedExperiment::Peptide &assay, DoubleReal feature_rt, DoubleList &feature_intensities, const std::set< String > &transition_ids=std::set< String >()) | ConfidenceScoring | protected |
| scoreFeature_(Feature &feature) | ConfidenceScoring | protected |
| scoreMap(FeatureMap<> &features) | ConfidenceScoring | inline |
| setLogType(LogType type) const | ProgressLogger | |
| setProgress(SignedSize value) const | ProgressLogger | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| stop_watch_ | ProgressLogger | mutableprotected |
| transition_map_ | ConfidenceScoring | protected |
| type_ | ProgressLogger | mutableprotected |
| value_ | ProgressLogger | mutableprotected |
| ~ProgressLogger() | ProgressLogger | |