| align(const FeatureMap<> &map, TransformationDescription &trafo) | MapAlignmentAlgorithmPoseClustering | |
| align(const MSExperiment<> &map, TransformationDescription &trafo) | MapAlignmentAlgorithmPoseClustering | |
| align(const ConsensusMap &map, TransformationDescription &trafo) | MapAlignmentAlgorithmPoseClustering | |
| alignCompactFeatureMaps(std::vector< std::vector< Peak2D > > &, std::vector< TransformationDescription > &) | MapAlignmentAlgorithm | virtual |
| alignConsensusMaps(std::vector< ConsensusMap > &, std::vector< TransformationDescription > &) | MapAlignmentAlgorithm | virtual |
| alignFeatureMaps(std::vector< FeatureMap<> > &, std::vector< TransformationDescription > &) | MapAlignmentAlgorithm | virtual |
| alignPeakMaps(std::vector< MSExperiment<> > &, std::vector< TransformationDescription > &) | MapAlignmentAlgorithm | virtual |
| alignPeptideIdentifications(std::vector< std::vector< PeptideIdentification > > &, std::vector< TransformationDescription > &) | MapAlignmentAlgorithm | virtual |
| begin_ | ProgressLogger | mutableprotected |
| check_defaults_ | DefaultParamHandler | protected |
| CMD enum value | ProgressLogger | |
| create() | MapAlignmentAlgorithmPoseClustering | inlinestatic |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| dlg_ | ProgressLogger | mutableprotected |
| end_ | ProgressLogger | mutableprotected |
| endProgress() const | ProgressLogger | |
| error_name_ | DefaultParamHandler | protected |
| fitModel(const String &model_type, const Param ¶ms, std::vector< TransformationDescription > &trafos) | MapAlignmentAlgorithm | static |
| getDefaults() const | DefaultParamHandler | |
| getLogType() const | ProgressLogger | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getProductName() | MapAlignmentAlgorithmPoseClustering | inlinestatic |
| getSubsections() const | DefaultParamHandler | |
| GUI enum value | ProgressLogger | |
| last_invoke_ | ProgressLogger | mutableprotected |
| LogType enum name | ProgressLogger | |
| MapAlignmentAlgorithm() | MapAlignmentAlgorithm | |
| MapAlignmentAlgorithmPoseClustering() | MapAlignmentAlgorithmPoseClustering | |
| MapAlignmentAlgorithmPoseClustering(const MapAlignmentAlgorithmPoseClustering &) | MapAlignmentAlgorithmPoseClustering | private |
| max_num_peaks_considered_ | MapAlignmentAlgorithmPoseClustering | protected |
| NONE enum value | ProgressLogger | |
| operator=(const MapAlignmentAlgorithmPoseClustering &) | MapAlignmentAlgorithmPoseClustering | private |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| pairfinder_ | MapAlignmentAlgorithmPoseClustering | protected |
| param_ | DefaultParamHandler | protected |
| ProgressLogger() | ProgressLogger | |
| recursion_depth_ | ProgressLogger | protectedstatic |
| reference_ | MapAlignmentAlgorithmPoseClustering | protected |
| registerChildren() | MapAlignmentAlgorithm | static |
| setLogType(LogType type) const | ProgressLogger | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setProgress(SignedSize value) const | ProgressLogger | |
| setReference(const MapType &map) | MapAlignmentAlgorithmPoseClustering | inline |
| OpenMS::MapAlignmentAlgorithm::setReference(Size reference_index=0, const String &reference_file="") | MapAlignmentAlgorithm | virtual |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| stop_watch_ | ProgressLogger | mutableprotected |
| subsections_ | DefaultParamHandler | protected |
| superimposer_ | MapAlignmentAlgorithmPoseClustering | protected |
| type_ | ProgressLogger | mutableprotected |
| updateMembers_() | MapAlignmentAlgorithmPoseClustering | protectedvirtual |
| value_ | ProgressLogger | mutableprotected |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~MapAlignmentAlgorithm() | MapAlignmentAlgorithm | virtual |
| ~MapAlignmentAlgorithmPoseClustering() | MapAlignmentAlgorithmPoseClustering | virtual |
| ~ProgressLogger() | ProgressLogger | |