#include <OpenMS/APPLICATIONS/TOPPBase.h>#include <OpenMS/CHEMISTRY/EnzymaticDigestion.h>#include <OpenMS/DATASTRUCTURES/SeqanIncludeWrapper.h>#include <OpenMS/FORMAT/IdXMLFile.h>#include <OpenMS/FORMAT/FASTAFile.h>#include <OpenMS/METADATA/ProteinIdentification.h>#include <OpenMS/SYSTEM/File.h>#include <algorithm>Classes | |
| struct | FoundProteinFunctor |
| struct | SAValue< Index< StringSet< Peptide >, IndexWotd<> > > |
| struct | EquivalenceClassAA_< T > |
Namespaces | |
| seqan | |
Functions | |
| template<bool enumerateA, bool enumerateB, typename TOnFoundFunctor , typename TTreeIteratorA , typename TIterPosA , typename TTreeIteratorB , typename TIterPosB , typename TErrors > | |
| void | _approximateAminoAcidTreeSearch (TOnFoundFunctor &onFoundFunctor, TTreeIteratorA iterA, TIterPosA iterPosA, TTreeIteratorB iterB_, TIterPosB iterPosB, TErrors errorsLeft, TErrors classErrorsLeft) |
| template<typename TEquivalenceTable > | |
| bool | _charComparator (AminoAcid charA, AminoAcid charB, TEquivalenceTable equivalence) |
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:23 using doxygen 1.8.5 |