| addChromatogram(const MSChromatogram< ChromatogramPeakType > &chromatogram) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| addSpectrum(const MSSpectrum< PeakT > &spectrum) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| areaBegin(CoordinateType min_rt, CoordinateType max_rt, CoordinateType min_mz, CoordinateType max_mz) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| areaBeginConst(CoordinateType min_rt, CoordinateType max_rt, CoordinateType min_mz, CoordinateType max_mz) const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| areaEnd() | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| areaEndConst() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| AreaIterator typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| AreaType typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| Base typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| begin() | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| begin() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| ChromatogramPeakType typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| chromatograms_ | MSExperiment< PeakT, ChromatogramPeakT > | protected |
| ChromatogramType typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| clear(bool clear_meta_data) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| clearChildIds_() | MSExperiment< PeakT, ChromatogramPeakT > | inlineprotectedvirtual |
| clearId(bool deep=true) | PersistentObject | |
| clearMetaDataArrays() | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| clearMetaInfo() | MetaInfoInterface | |
| clearRanges() | RangeManager< 2 > | inline |
| comment_ | ExperimentalSettings | protected |
| const_iterator typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| ConstAreaIterator typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| ConstIterator typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| contacts_ | ExperimentalSettings | protected |
| CoordinateType typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| createIfNotExists_() | MetaInfoInterface | inlineprotected |
| datetime_ | ExperimentalSettings | protected |
| DIMENSION enum value | RangeManager< 2 > | |
| DocumentIdentifier() | DocumentIdentifier | |
| DocumentIdentifier(const DocumentIdentifier &source) | DocumentIdentifier | |
| empty() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| end() | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| end() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| ExperimentalSettings() | ExperimentalSettings | |
| ExperimentalSettings(const ExperimentalSettings &source) | ExperimentalSettings | |
| file_path_ | DocumentIdentifier | protected |
| file_type_ | DocumentIdentifier | protected |
| fraction_identifier_ | ExperimentalSettings | protected |
| get2DData(Container &cont) const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| getChromatogram(Size id) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| getChromatograms() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| getComment() const | ExperimentalSettings | |
| getContacts() const | ExperimentalSettings | |
| getContacts() | ExperimentalSettings | |
| getDataRange() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| getDateTime() const | ExperimentalSettings | |
| getExperimentalSettings() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| getExperimentalSettings() | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| getFractionIdentifier() const | ExperimentalSettings | |
| getHPLC() const | ExperimentalSettings | |
| getHPLC() | ExperimentalSettings | |
| getIdentifier() const | DocumentIdentifier | |
| getInstrument() const | ExperimentalSettings | |
| getInstrument() | ExperimentalSettings | |
| getKeys(std::vector< String > &keys) const | MetaInfoInterface | |
| getKeys(std::vector< UInt > &keys) const | MetaInfoInterface | |
| getLoadedFilePath() const | DocumentIdentifier | |
| getLoadedFileType() const | DocumentIdentifier | |
| getMax() const | RangeManager< 2 > | inline |
| getMaxInt() const | RangeManager< 2 > | inline |
| getMaxMZ() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| getMaxRT() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| getMetaValue(const String &name) const | MetaInfoInterface | |
| getMetaValue(UInt index) const | MetaInfoInterface | |
| getMin() const | RangeManager< 2 > | inline |
| getMinInt() const | RangeManager< 2 > | inline |
| getMinMZ() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| getMinRT() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| getMSLevels() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| getPersistenceId() const | PersistentObject | |
| getPrecursorSpectrum(ConstIterator iterator) const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| getProteinIdentifications() const | ExperimentalSettings | |
| getProteinIdentifications() | ExperimentalSettings | |
| getSample() const | ExperimentalSettings | |
| getSample() | ExperimentalSettings | |
| getSize() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| getSourceFiles() const | ExperimentalSettings | |
| getSourceFiles() | ExperimentalSettings | |
| getSpectra() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| getSpectra() | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| getTIC() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| hplc_ | ExperimentalSettings | protected |
| id_ | DocumentIdentifier | protected |
| instrument_ | ExperimentalSettings | protected |
| int_range_ | RangeManager< 2 > | protected |
| IntensityRangeType typedef | RangeManager< 2 > | |
| IntensityType typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| isMetaEmpty() const | MetaInfoInterface | |
| isSorted(bool check_mz=true) const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| Iterator typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| iterator typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| meta_ | MetaInfoInterface | protected |
| MetaInfoInterface() | MetaInfoInterface | |
| MetaInfoInterface(const MetaInfoInterface &rhs) | MetaInfoInterface | |
| metaRegistry() | MetaInfoInterface | static |
| metaValueExists(const String &name) const | MetaInfoInterface | |
| metaValueExists(UInt index) const | MetaInfoInterface | |
| ms_levels_ | MSExperiment< PeakT, ChromatogramPeakT > | protected |
| MSExperiment() | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| MSExperiment(const MSExperiment &source) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| operator!=(const MSExperiment &rhs) const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| RangeManager< 2 >::operator!=(const RangeManager &rhs) const | RangeManager< 2 > | inline |
| OpenMS::ExperimentalSettings::operator!=(const ExperimentalSettings &rhs) const | ExperimentalSettings | |
| OpenMS::MetaInfoInterface::operator!=(const MetaInfoInterface &rhs) const | MetaInfoInterface | |
| operator=(const MSExperiment &source) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| operator=(const ExperimentalSettings &source) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| RangeManager< 2 >::operator=(const RangeManager &rhs) | RangeManager< 2 > | inline |
| OpenMS::MetaInfoInterface::operator=(const MetaInfoInterface &rhs) | MetaInfoInterface | |
| OpenMS::DocumentIdentifier::operator=(const DocumentIdentifier &source) | DocumentIdentifier | |
| OpenMS::PersistentObject::operator=(const PersistentObject &rhs) | PersistentObject | |
| operator==(const MSExperiment &rhs) const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| RangeManager< 2 >::operator==(const RangeManager &rhs) const | RangeManager< 2 > | inline |
| OpenMS::ExperimentalSettings::operator==(const ExperimentalSettings &rhs) const | ExperimentalSettings | |
| OpenMS::MetaInfoInterface::operator==(const MetaInfoInterface &rhs) const | MetaInfoInterface | |
| OpenMS::DocumentIdentifier::operator==(const DocumentIdentifier &rhs) const | DocumentIdentifier | |
| operator[](Size n) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| operator[](Size n) const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| PeakType typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| persistence_id_ | PersistentObject | protected |
| PersistentObject() | PersistentObject | |
| pos_range_ | RangeManager< 2 > | protected |
| PositionRangeType typedef | RangeManager< 2 > | |
| PositionType typedef | RangeManager< 2 > | |
| protein_identifications_ | ExperimentalSettings | protected |
| RangeManager() | RangeManager< 2 > | inline |
| RangeManager(const RangeManager &rhs) | RangeManager< 2 > | inline |
| RangeManagerType typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| removeMetaValue(const String &name) | MetaInfoInterface | |
| removeMetaValue(UInt index) | MetaInfoInterface | |
| reserve(Size s) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| reserveSpaceChromatograms(Size s) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| reserveSpaceSpectra(Size s) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| reset() | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| resize(Size s) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| RTBegin(CoordinateType rt) const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| RTBegin(CoordinateType rt) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| RTEnd(CoordinateType rt) const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| RTEnd(CoordinateType rt) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| sample_ | ExperimentalSettings | protected |
| set2DData(const Container &cont) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| setChromatograms(const std::vector< MSChromatogram< ChromatogramPeakType > > &chromatograms) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| setComment(const String &comment) | ExperimentalSettings | |
| setContacts(const std::vector< ContactPerson > &contacts) | ExperimentalSettings | |
| setDateTime(const DateTime &date) | ExperimentalSettings | |
| setFractionIdentifier(const String &fraction_identifier) | ExperimentalSettings | |
| setHPLC(const HPLC &hplc) | ExperimentalSettings | |
| setIdentifier(const String &id) | DocumentIdentifier | |
| setInstrument(const Instrument &instrument) | ExperimentalSettings | |
| setLoadedFilePath(const String &file_name) | DocumentIdentifier | |
| setLoadedFileType(const String &file_name) | DocumentIdentifier | |
| setMetaValue(const String &name, const DataValue &value) | MetaInfoInterface | |
| setMetaValue(UInt index, const DataValue &value) | MetaInfoInterface | |
| setPersistenceId(const UID &persistence_id) | PersistentObject | |
| setProteinIdentifications(const std::vector< ProteinIdentification > &protein_identifications) | ExperimentalSettings | |
| setSample(const Sample &sample) | ExperimentalSettings | |
| setSourceFiles(const std::vector< SourceFile > &source_files) | ExperimentalSettings | |
| setSpectra(const std::vector< MSSpectrum< PeakT > > &spectra) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| size() const | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| sortChromatograms(bool sort_rt=true) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| sortSpectra(bool sort_mz=true) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| source_files_ | ExperimentalSettings | protected |
| spectra_ | MSExperiment< PeakT, ChromatogramPeakT > | protected |
| SpectrumType typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| swap(MSExperiment &from) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| OpenMS::ExperimentalSettings::swap(DocumentIdentifier &from) | DocumentIdentifier | |
| total_size_ | MSExperiment< PeakT, ChromatogramPeakT > | protected |
| updateRanges() | MSExperiment< PeakT, ChromatogramPeakT > | inlinevirtual |
| updateRanges(Int ms_level) | MSExperiment< PeakT, ChromatogramPeakT > | inline |
| updateRanges_(const PeakIteratorType &begin, const PeakIteratorType &end) | RangeManager< 2 > | inlineprotected |
| value_type typedef | MSExperiment< PeakT, ChromatogramPeakT > | |
| ~DocumentIdentifier() | DocumentIdentifier | virtual |
| ~ExperimentalSettings() | ExperimentalSettings | |
| ~MetaInfoInterface() | MetaInfoInterface | |
| ~PersistentObject() | PersistentObject | virtual |
| ~RangeManager() | RangeManager< 2 > | inlinevirtual |